PoplarV1, Main, Exploration, bibRecord, 001351

Identification and expression analyses of the alanine aminotransferase (AlaAT) gene family in poplar seedlings.

Identifieur interne : 001351 ( Main/Exploration ); précédent : 001350; suivant : 001352

Identification and expression analyses of the alanine aminotransferase (AlaAT) gene family in poplar seedlings.

Source :

Scientific reports [ 2045-2322 ] ; 2017.

RBID : pubmed:28378825

Descripteurs français

English descriptors

KwdEn :
- Alanine Transaminase (classification), Alanine Transaminase (genetics), Alanine Transaminase (metabolism), Gene Expression Profiling (MeSH), Gene Expression Regulation, Plant (MeSH), Glutamine (metabolism), Isoenzymes (genetics), Isoenzymes (metabolism), Multigene Family (MeSH), Nitrogen (metabolism), Phylogeny (MeSH), Plant Leaves (enzymology), Plant Leaves (genetics), Plant Proteins (genetics), Plant Proteins (metabolism), Plant Roots (enzymology), Plant Roots (genetics), Plant Stems (enzymology), Plant Stems (genetics), Populus (enzymology), Populus (genetics), Seedlings (enzymology), Seedlings (genetics).
MESH :
- chemical , classification : Alanine Transaminase.
- chemical , genetics : Alanine Transaminase, Isoenzymes, Plant Proteins.
- chemical , metabolism : Alanine Transaminase, Glutamine, Isoenzymes, Nitrogen, Plant Proteins.
- enzymology : Plant Leaves, Plant Roots, Plant Stems, Populus, Seedlings.
- genetics : Plant Leaves, Plant Roots, Plant Stems, Populus, Seedlings.
- Gene Expression Profiling, Gene Expression Regulation, Plant, Multigene Family, Phylogeny.

Abstract

Alanine aminotransferase (AlaAT, E.C.2.6.1.2) catalyzes the reversible conversion of pyruvate and glutamate to alanine and α-oxoglutarate. The AlaAT gene family has been well studied in some herbaceous plants, but has not been well characterized in woody plants. In this study, we identified four alanine aminotransferase homologues in Populus trichocarpa, which could be classified into two subgroups, A and B. AlaAT3 and AlaAT4 in subgroup A encode AlaAT, while AlaAT1 and AlaAT2 in subgroup B encode glutamate:glyoxylate aminotransferase (GGAT), which catalyzes the reaction of glutamate and glyoxylate to α-oxoglutarate and glycine. Four AlaAT genes were cloned from P. simonii × P. nigra. PnAlaAT1 and PnAlaAT2 were expressed predominantly in leaves and induced by exogenous nitrogen and exhibited a diurnal fluctuation in leaves, but was inhibited in roots. PnAlaAT3 and PnAlaAT4 were mainly expressed in roots, stems and leaves, and was induced by exogenous nitrogen. The expression of PnAlaAT3 gene could be regulated by glutamine or its related metabolites in roots. Our results suggest that PnAlaAT3 gene may play an important role in nitrogen metabolism and is regulated by glutamine or its related metabolites in the roots of P. simonii × P. nigra.

DOI: 10.1038/srep45933
PubMed: 28378825
PubMed Central: PMC5380993

Affiliations:

République populaire de Chine

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Le document en format XML

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<author><name sortKey="Sun, Yan" sort="Sun, Yan" uniqKey="Sun Y" first="Yan" last="Sun">Yan Sun</name>
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<country xml:lang="fr">République populaire de Chine</country>
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<author><name sortKey="Liu, Zhongye" sort="Liu, Zhongye" uniqKey="Liu Z" first="Zhongye" last="Liu">Zhongye Liu</name>
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<country xml:lang="fr">République populaire de Chine</country>
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<wicri:noRegion>Harbin 150040</wicri:noRegion>
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<author><name sortKey="Yang, Han" sort="Yang, Han" uniqKey="Yang H" first="Han" last="Yang">Han Yang</name>
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<author><name sortKey="Yang, Chengjun" sort="Yang, Chengjun" uniqKey="Yang C" first="Chengjun" last="Yang">Chengjun Yang</name>
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<author><name sortKey="Wang, Hongwei" sort="Wang, Hongwei" uniqKey="Wang H" first="Hongwei" last="Wang">Hongwei Wang</name>
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<author><name sortKey="Li, Ying" sort="Li, Ying" uniqKey="Li Y" first="Ying" last="Li">Ying Li</name>
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<author><name sortKey="Liu, Guanjun" sort="Liu, Guanjun" uniqKey="Liu G" first="Guanjun" last="Liu">Guanjun Liu</name>
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<term>Alanine Transaminase (genetics)</term>
<term>Alanine Transaminase (metabolism)</term>
<term>Gene Expression Profiling (MeSH)</term>
<term>Gene Expression Regulation, Plant (MeSH)</term>
<term>Glutamine (metabolism)</term>
<term>Isoenzymes (genetics)</term>
<term>Isoenzymes (metabolism)</term>
<term>Multigene Family (MeSH)</term>
<term>Nitrogen (metabolism)</term>
<term>Phylogeny (MeSH)</term>
<term>Plant Leaves (enzymology)</term>
<term>Plant Leaves (genetics)</term>
<term>Plant Proteins (genetics)</term>
<term>Plant Proteins (metabolism)</term>
<term>Plant Roots (enzymology)</term>
<term>Plant Roots (genetics)</term>
<term>Plant Stems (enzymology)</term>
<term>Plant Stems (genetics)</term>
<term>Populus (enzymology)</term>
<term>Populus (genetics)</term>
<term>Seedlings (enzymology)</term>
<term>Seedlings (genetics)</term>
</keywords>
<keywords scheme="KwdFr" xml:lang="fr"><term>Alanine transaminase (classification)</term>
<term>Alanine transaminase (génétique)</term>
<term>Alanine transaminase (métabolisme)</term>
<term>Analyse de profil d'expression de gènes (MeSH)</term>
<term>Azote (métabolisme)</term>
<term>Famille multigénique (MeSH)</term>
<term>Feuilles de plante (enzymologie)</term>
<term>Feuilles de plante (génétique)</term>
<term>Glutamine (métabolisme)</term>
<term>Isoenzymes (génétique)</term>
<term>Isoenzymes (métabolisme)</term>
<term>Phylogenèse (MeSH)</term>
<term>Plant (enzymologie)</term>
<term>Plant (génétique)</term>
<term>Populus (enzymologie)</term>
<term>Populus (génétique)</term>
<term>Protéines végétales (génétique)</term>
<term>Protéines végétales (métabolisme)</term>
<term>Racines de plante (enzymologie)</term>
<term>Racines de plante (génétique)</term>
<term>Régulation de l'expression des gènes végétaux (MeSH)</term>
<term>Tiges de plante (enzymologie)</term>
<term>Tiges de plante (génétique)</term>
</keywords>
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</keywords>
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<term>Isoenzymes</term>
<term>Plant Proteins</term>
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<term>Glutamine</term>
<term>Isoenzymes</term>
<term>Nitrogen</term>
<term>Plant Proteins</term>
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<term>Plant</term>
<term>Populus</term>
<term>Racines de plante</term>
<term>Tiges de plante</term>
</keywords>
<keywords scheme="MESH" qualifier="enzymology" xml:lang="en"><term>Plant Leaves</term>
<term>Plant Roots</term>
<term>Plant Stems</term>
<term>Populus</term>
<term>Seedlings</term>
</keywords>
<keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Plant Leaves</term>
<term>Plant Roots</term>
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<term>Seedlings</term>
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<keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>Alanine transaminase</term>
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<term>Racines de plante</term>
<term>Tiges de plante</term>
</keywords>
<keywords scheme="MESH" qualifier="métabolisme" xml:lang="fr"><term>Alanine transaminase</term>
<term>Azote</term>
<term>Glutamine</term>
<term>Isoenzymes</term>
<term>Protéines végétales</term>
</keywords>
<keywords scheme="MESH" xml:lang="en"><term>Gene Expression Profiling</term>
<term>Gene Expression Regulation, Plant</term>
<term>Multigene Family</term>
<term>Phylogeny</term>
</keywords>
<keywords scheme="MESH" xml:lang="fr"><term>Analyse de profil d'expression de gènes</term>
<term>Famille multigénique</term>
<term>Phylogenèse</term>
<term>Régulation de l'expression des gènes végétaux</term>
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<front><div type="abstract" xml:lang="en">Alanine aminotransferase (AlaAT, E.C.2.6.1.2) catalyzes the reversible conversion of pyruvate and glutamate to alanine and α-oxoglutarate. The AlaAT gene family has been well studied in some herbaceous plants, but has not been well characterized in woody plants. In this study, we identified four alanine aminotransferase homologues in Populus trichocarpa, which could be classified into two subgroups, A and B. AlaAT3 and AlaAT4 in subgroup A encode AlaAT, while AlaAT1 and AlaAT2 in subgroup B encode glutamate:glyoxylate aminotransferase (GGAT), which catalyzes the reaction of glutamate and glyoxylate to α-oxoglutarate and glycine. Four AlaAT genes were cloned from P. simonii × P. nigra. PnAlaAT1 and PnAlaAT2 were expressed predominantly in leaves and induced by exogenous nitrogen and exhibited a diurnal fluctuation in leaves, but was inhibited in roots. PnAlaAT3 and PnAlaAT4 were mainly expressed in roots, stems and leaves, and was induced by exogenous nitrogen. The expression of PnAlaAT3 gene could be regulated by glutamine or its related metabolites in roots. Our results suggest that PnAlaAT3 gene may play an important role in nitrogen metabolism and is regulated by glutamine or its related metabolites in the roots of P. simonii × P. nigra.</div>
</front>
</TEI>
<pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">28378825</PMID>
<DateCompleted><Year>2018</Year>
<Month>12</Month>
<Day>11</Day>
</DateCompleted>
<DateRevised><Year>2018</Year>
<Month>12</Month>
<Day>11</Day>
</DateRevised>
<Article PubModel="Electronic"><Journal><ISSN IssnType="Electronic">2045-2322</ISSN>
<JournalIssue CitedMedium="Internet"><Volume>7</Volume>
<PubDate><Year>2017</Year>
<Month>04</Month>
<Day>05</Day>
</PubDate>
</JournalIssue>
<Title>Scientific reports</Title>
<ISOAbbreviation>Sci Rep</ISOAbbreviation>
</Journal>
<ArticleTitle>Identification and expression analyses of the alanine aminotransferase (AlaAT) gene family in poplar seedlings.</ArticleTitle>
<Pagination><MedlinePgn>45933</MedlinePgn>
</Pagination>
<ELocationID EIdType="doi" ValidYN="Y">10.1038/srep45933</ELocationID>
<Abstract><AbstractText>Alanine aminotransferase (AlaAT, E.C.2.6.1.2) catalyzes the reversible conversion of pyruvate and glutamate to alanine and α-oxoglutarate. The AlaAT gene family has been well studied in some herbaceous plants, but has not been well characterized in woody plants. In this study, we identified four alanine aminotransferase homologues in Populus trichocarpa, which could be classified into two subgroups, A and B. AlaAT3 and AlaAT4 in subgroup A encode AlaAT, while AlaAT1 and AlaAT2 in subgroup B encode glutamate:glyoxylate aminotransferase (GGAT), which catalyzes the reaction of glutamate and glyoxylate to α-oxoglutarate and glycine. Four AlaAT genes were cloned from P. simonii × P. nigra. PnAlaAT1 and PnAlaAT2 were expressed predominantly in leaves and induced by exogenous nitrogen and exhibited a diurnal fluctuation in leaves, but was inhibited in roots. PnAlaAT3 and PnAlaAT4 were mainly expressed in roots, stems and leaves, and was induced by exogenous nitrogen. The expression of PnAlaAT3 gene could be regulated by glutamine or its related metabolites in roots. Our results suggest that PnAlaAT3 gene may play an important role in nitrogen metabolism and is regulated by glutamine or its related metabolites in the roots of P. simonii × P. nigra.</AbstractText>
</Abstract>
<AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Xu</LastName>
<ForeName>Zhiru</ForeName>
<Initials>Z</Initials>
<AffiliationInfo><Affiliation>State Key Laboratory of Tree Genetics and Breeding (Northeast Forestry University), School of Forestry, Northeast Forestry University, Harbin 150040, China.</Affiliation>
</AffiliationInfo>
<AffiliationInfo><Affiliation>College of Life Science, Northeast Forestry University, Harbin 150040, China.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Ma</LastName>
<ForeName>Jing</ForeName>
<Initials>J</Initials>
<AffiliationInfo><Affiliation>College of Life Science, Northeast Forestry University, Harbin 150040, China.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Qu</LastName>
<ForeName>Chunpu</ForeName>
<Initials>C</Initials>
<AffiliationInfo><Affiliation>State Key Laboratory of Tree Genetics and Breeding (Northeast Forestry University), School of Forestry, Northeast Forestry University, Harbin 150040, China.</Affiliation>
</AffiliationInfo>
<AffiliationInfo><Affiliation>School of Forestry, Northeast Forestry University, Harbin 150040, China.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Hu</LastName>
<ForeName>Yanbo</ForeName>
<Initials>Y</Initials>
<AffiliationInfo><Affiliation>College of Life Science, Northeast Forestry University, Harbin 150040, China.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Hao</LastName>
<ForeName>Bingqing</ForeName>
<Initials>B</Initials>
<AffiliationInfo><Affiliation>State Key Laboratory of Tree Genetics and Breeding (Northeast Forestry University), School of Forestry, Northeast Forestry University, Harbin 150040, China.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Sun</LastName>
<ForeName>Yan</ForeName>
<Initials>Y</Initials>
<AffiliationInfo><Affiliation>State Key Laboratory of Tree Genetics and Breeding (Northeast Forestry University), School of Forestry, Northeast Forestry University, Harbin 150040, China.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Liu</LastName>
<ForeName>Zhongye</ForeName>
<Initials>Z</Initials>
<AffiliationInfo><Affiliation>State Key Laboratory of Tree Genetics and Breeding (Northeast Forestry University), School of Forestry, Northeast Forestry University, Harbin 150040, China.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Yang</LastName>
<ForeName>Han</ForeName>
<Initials>H</Initials>
<AffiliationInfo><Affiliation>State Key Laboratory of Tree Genetics and Breeding (Northeast Forestry University), School of Forestry, Northeast Forestry University, Harbin 150040, China.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Yang</LastName>
<ForeName>Chengjun</ForeName>
<Initials>C</Initials>
<AffiliationInfo><Affiliation>School of Forestry, Northeast Forestry University, Harbin 150040, China.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Wang</LastName>
<ForeName>Hongwei</ForeName>
<Initials>H</Initials>
<AffiliationInfo><Affiliation>College of Life Science, Northeast Forestry University, Harbin 150040, China.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Li</LastName>
<ForeName>Ying</ForeName>
<Initials>Y</Initials>
<AffiliationInfo><Affiliation>Key Laboratory of Saline-alkali Vegetation Ecology Restoration in Oil Field (SAVER), Ministry of education, Alkali Soil Natural Environmental Science Center (ASNESC), Northeast Forestry University, Harbin 150040, China.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Liu</LastName>
<ForeName>Guanjun</ForeName>
<Initials>G</Initials>
<AffiliationInfo><Affiliation>State Key Laboratory of Tree Genetics and Breeding (Northeast Forestry University), School of Forestry, Northeast Forestry University, Harbin 150040, China.</Affiliation>
</AffiliationInfo>
<AffiliationInfo><Affiliation>School of Forestry, Northeast Forestry University, Harbin 150040, China.</Affiliation>
</AffiliationInfo>
</Author>
</AuthorList>
<Language>eng</Language>
<PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType>
<PublicationType UI="D013485">Research Support, Non-U.S. Gov't</PublicationType>
</PublicationTypeList>
<ArticleDate DateType="Electronic"><Year>2017</Year>
<Month>04</Month>
<Day>05</Day>
</ArticleDate>
</Article>
<MedlineJournalInfo><Country>England</Country>
<MedlineTA>Sci Rep</MedlineTA>
<NlmUniqueID>101563288</NlmUniqueID>
<ISSNLinking>2045-2322</ISSNLinking>
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<ChemicalList><Chemical><RegistryNumber>0</RegistryNumber>
<NameOfSubstance UI="D007527">Isoenzymes</NameOfSubstance>
</Chemical>
<Chemical><RegistryNumber>0</RegistryNumber>
<NameOfSubstance UI="D010940">Plant Proteins</NameOfSubstance>
</Chemical>
<Chemical><RegistryNumber>0RH81L854J</RegistryNumber>
<NameOfSubstance UI="D005973">Glutamine</NameOfSubstance>
</Chemical>
<Chemical><RegistryNumber>EC 2.6.1.2</RegistryNumber>
<NameOfSubstance UI="D000410">Alanine Transaminase</NameOfSubstance>
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<MeshHeadingList><MeshHeading><DescriptorName UI="D000410" MajorTopicYN="N">Alanine Transaminase</DescriptorName>
<QualifierName UI="Q000145" MajorTopicYN="N">classification</QualifierName>
<QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName>
<QualifierName UI="Q000378" MajorTopicYN="N">metabolism</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D020869" MajorTopicYN="N">Gene Expression Profiling</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D018506" MajorTopicYN="Y">Gene Expression Regulation, Plant</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D005973" MajorTopicYN="N">Glutamine</DescriptorName>
<QualifierName UI="Q000378" MajorTopicYN="N">metabolism</QualifierName>
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<MeshHeading><DescriptorName UI="D007527" MajorTopicYN="N">Isoenzymes</DescriptorName>
<QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName>
<QualifierName UI="Q000378" MajorTopicYN="N">metabolism</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D005810" MajorTopicYN="N">Multigene Family</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D009584" MajorTopicYN="N">Nitrogen</DescriptorName>
<QualifierName UI="Q000378" MajorTopicYN="N">metabolism</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D010802" MajorTopicYN="N">Phylogeny</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D018515" MajorTopicYN="N">Plant Leaves</DescriptorName>
<QualifierName UI="Q000201" MajorTopicYN="N">enzymology</QualifierName>
<QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D010940" MajorTopicYN="N">Plant Proteins</DescriptorName>
<QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName>
<QualifierName UI="Q000378" MajorTopicYN="N">metabolism</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D018517" MajorTopicYN="N">Plant Roots</DescriptorName>
<QualifierName UI="Q000201" MajorTopicYN="N">enzymology</QualifierName>
<QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D018547" MajorTopicYN="N">Plant Stems</DescriptorName>
<QualifierName UI="Q000201" MajorTopicYN="N">enzymology</QualifierName>
<QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D032107" MajorTopicYN="N">Populus</DescriptorName>
<QualifierName UI="Q000201" MajorTopicYN="N">enzymology</QualifierName>
<QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D036226" MajorTopicYN="N">Seedlings</DescriptorName>
<QualifierName UI="Q000201" MajorTopicYN="N">enzymology</QualifierName>
<QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName>
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</country>
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<tree><country name="République populaire de Chine"><noRegion><name sortKey="Xu, Zhiru" sort="Xu, Zhiru" uniqKey="Xu Z" first="Zhiru" last="Xu">Zhiru Xu</name>
</noRegion>
<name sortKey="Hao, Bingqing" sort="Hao, Bingqing" uniqKey="Hao B" first="Bingqing" last="Hao">Bingqing Hao</name>
<name sortKey="Hu, Yanbo" sort="Hu, Yanbo" uniqKey="Hu Y" first="Yanbo" last="Hu">Yanbo Hu</name>
<name sortKey="Li, Ying" sort="Li, Ying" uniqKey="Li Y" first="Ying" last="Li">Ying Li</name>
<name sortKey="Liu, Guanjun" sort="Liu, Guanjun" uniqKey="Liu G" first="Guanjun" last="Liu">Guanjun Liu</name>
<name sortKey="Liu, Guanjun" sort="Liu, Guanjun" uniqKey="Liu G" first="Guanjun" last="Liu">Guanjun Liu</name>
<name sortKey="Liu, Zhongye" sort="Liu, Zhongye" uniqKey="Liu Z" first="Zhongye" last="Liu">Zhongye Liu</name>
<name sortKey="Ma, Jing" sort="Ma, Jing" uniqKey="Ma J" first="Jing" last="Ma">Jing Ma</name>
<name sortKey="Qu, Chunpu" sort="Qu, Chunpu" uniqKey="Qu C" first="Chunpu" last="Qu">Chunpu Qu</name>
<name sortKey="Qu, Chunpu" sort="Qu, Chunpu" uniqKey="Qu C" first="Chunpu" last="Qu">Chunpu Qu</name>
<name sortKey="Sun, Yan" sort="Sun, Yan" uniqKey="Sun Y" first="Yan" last="Sun">Yan Sun</name>
<name sortKey="Wang, Hongwei" sort="Wang, Hongwei" uniqKey="Wang H" first="Hongwei" last="Wang">Hongwei Wang</name>
<name sortKey="Xu, Zhiru" sort="Xu, Zhiru" uniqKey="Xu Z" first="Zhiru" last="Xu">Zhiru Xu</name>
<name sortKey="Yang, Chengjun" sort="Yang, Chengjun" uniqKey="Yang C" first="Chengjun" last="Yang">Chengjun Yang</name>
<name sortKey="Yang, Han" sort="Yang, Han" uniqKey="Yang H" first="Han" last="Yang">Han Yang</name>
</country>
</tree>
</affiliations>
</record>

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   |texte=   Identification and expression analyses of the alanine aminotransferase (AlaAT) gene family in poplar seedlings.
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Identification and expression analyses of the alanine aminotransferase (AlaAT) gene family in poplar seedlings.

Identification and expression analyses of the alanine aminotransferase (AlaAT) gene family in poplar seedlings.

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